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Indulge in the warm, spicy flavor of a cinnamon roll with these high-protein cottage cheese muffins. This is the perfect recipe when you want a savory treat for breakfast or for your afternoon coffee.
I love running errands. I know it’s something weird to say, but it’s something I enjoy doing.
Every time I go out, I have the opportunity to pass by my favorite bakery. Every time, I am filled with the warm and comforting aroma of freshly baked cinnamon rolls.
I know you’ve all been there.
But if you are on a health journey like me, this aroma (that we all love) can become a temptation.
So, if you are craving a roll but want to keep up with your health goals, these easy cinnamon roll cottage cheese muffins are for you.

This recipe was born from a desire to create a healthier breakfast treat or something to have along with my afternoon cup of coffee.
Pin this now to find it later
Pin ItWhat I love about these is that they perfectly capture the sweet, spiced essence of a classic cinnamon roll, but in a convenient, high-protein muffin form.
But what makes these truly special?
It’s all about the cottage cheese.
The cottage cheese melts away during baking, leaving behind an incredibly moist texture and giving you a protein boost. And, it’s blended with ripe bananas and creamy peanut butter to create the ultimate tender crumb.

Ingredients and Substitutes
WET INGREDIENTS
Ripe bananas (3 medium) – You can use unsweetened applesauce (1 cup) or pumpkin puree as an alternative.
Eggs (2) – Replace with flaxseed or chia seed eggs (1 tbsp of seeds with 2.5 tbsp of water per egg).
Cottage cheese (½ cup) – Swap with plain Greek yogurt or ricotta cheese.
Peanut butter, creamy (½ cup) – You can use any nut butter of your liking, like almond or cashew butter. If you want a nut-free version, use sunflower seed butter.
Butter, room temperature (2 tbsp) – Use coconut oil, ghee, or avocado oil as a replacement.
Maple syrup (¼ cup) – Feel free to use honey, agave syrup, or a sugar-free option.
Vanilla extract (1 tbsp) – You can also use vanilla bean paste or almond extract for a different flavor profile.
DRY INGREDIENTS
Whole wheat flour, or all-purpose flour (1 1/4 cups) – Replace with almond flour for a keto-friendly version or oat flour for a gluten-free alternative.
Vanilla protein powder (1/4 cup) – You can also use cinnamon roll-flavored protein powder or unflavored. If you don’t have any protein powder, just substitute for regular flour.
Baking soda (1½ tsp)
Salt (½ tsp)
Cinnamon Swirl
Cinnamon (2 tbsp)
Butter, melted (2 tbsp) – Use melted coconut or ghee.
Maple syrup (1 tbsp)
GLAZE
Greek yogurt (3 tbsp) – Swap with cream cheese or a vegan yogurt alternative.
Maple syrup (1 tbsp)
Vanilla extract (1 tsp) – You can also use a bit of coconut essence.

How to Make Cinnamon Roll Cottage Cheese Muffins
Step 1. Preheat your oven to 350°F. Prepare a 12-muffin tin tray with liners and spray them with oil to cover the bottom and the sides.
Place the bananas into the food processor.
Step 2. Add the rest of the wet ingredients.

Step 3. Pulse or blend until they are all combined. Pour the mix into a large bowl.
Step 4. Grab a medium bowl and add all the dry ingredients.

Step 5. Give the dry ingredients a good stir.
Step 6. Sift the dry ingredients into the wet ones. However, make sure you do it in four batches to ensure it all gets mixed evenly.

Step 7. Once you combine the dry and wet ingredients, you should be left with a thick batter.
Step 8. Now, transfer the batter to the 12 muffin tins.

Step 9. Grab a small bowl and combine all the cinnamon swirl ingredients.
Step 10. Add some of the cinnamon swirl on top of the batter. Then, grab a knife and swirl the top of the muffin to create a cinnamon roll effect.

Step 11. Grab another small bowl and add the glaze ingredients.
Step 12. Give the ingredients a good stir.

Step 13. Place the muffins in the oven and bake them for 18-20 minutes, or until a toothpick comes out clean. When they are already cooked, take them out of the oven.
Step 14. Let the muffins cool down for 5-10 minutes. Then, drizzle each muffin with the glaze.

Pin this now to find it later
Pin ItHow I Would Modify This Recipe
- Add Some Crunch: Try adding ½ cup of pecans or walnuts into the batter for a delicious crunch.
- Boost the Fruit: Add some diced apples or shredded carrots to create a unique cinnamon muffin.
- Spice it Up: Add a pinch of nutmeg or cardamom to the cinnamon swirl to give it a more complex flavor.

My Tips & Tricks
- Don’t Overmix the Batter: When combining the wet ingredients and dry, mix them until they are just combined. Overmixing can develop the gluten and result in tough, dense muffins.
- Grease Your Liners: Even if you are using paper liners, a quick spray of cooking oil can prevent them from sticking.
- Check for Doneness: Every oven is different. So start checking your muffins around the 18-minute mark.
My Storage Tips
To store these delicious muffins, place them in an airtight container. You can keep them at room temperature for up to 2-3 days.
Now, if you want to keep them for longer (good for you for practicing portion control), you can place them in the fridge and keep them there for up to 7 days.
And, if you want to have them for meal prep, you can place them in a freezer-safe container and keep them in the freezer for up to 3 months.
To reheat them, place them in the microwave for 20-30 seconds.

Other Cottage Cheese Recipes
- High Protein Cinnamon Rolls with Cottage Cheese
- Flourless Cinnamon Swirl Banana Bread
- Flourless Chocolate Cake with Cottage Cheese

Cinnamon Roll Cottage Cheese Muffins
Cals: 234 Protein: 8.1 Carbs: 28 Fat: 11
Ingredients
Wet Ingredients
- 3 medium ripe bananas
- 2 eggs
- ½ cup cottage cheese
- ½ cup peanut butter creamy
- 2 tbsp butter room temperature
- ¼ cup maple syrup
- 1 tbsp vanilla extract
Dry Ingredients
- 1 1/4 cups whole wheat flour or all-purpose flour
- 1/4 cup vanilla protein powder or what/all-purpose flour
- 1½ tsp baking soda
- ½ tsp salt
Cinnamon Swirl
- 2 tbsp cinnamon
- 2 tbsp butter melted
- 1 tbsp maple syrup
Glaze
- 3 tbsp Greek yogurt
- 1 tbsp maple syrup
- 1 tsp vanilla extract
Instructions
- Preheat the oven to 350F. Line a 12-muffin tin with liners and spray them with oil to cover the bottom and the sides.
- Add all of the wet ingredients into a food processor or a blender. Pulse or blend until all the ingredients blend well. Transfer into a large bowl.
- In a medium bowl, combine all of the dry ingredients.
- Sift the mixture of dry ingredients into the wet ingredients. Do it in 4 batches and mix throughout to form a thicker batter.
- Transfer the batter into the muffin tin and form 12 muffins.
- Finally, in a small bowl, combine cinnamon swirl ingredients.
- Top up each muffin with the swirl mixture and then, using a knife, swirl the top of the muffin to create a cinnamon roll effect.
- Bake in the oven for 18-20 minutes or until the toothpick comes out clean when you insert it.
- While the muffins are baking, mix all of the glaze ingredients together in a small bowl.
- Once the muffins have baked, let them cool down for 5-10 minutes. Drizzle each muffin with glaze and serve.
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.













I canโt wait to try these. Do you think Oat flour can be substituted for the flour. And can the protein powder be omitted. Thank you.
You can substitute with gluten-free flour that is combined in ratios to substitute regular wheat flour. If you are removing protein powder, add 1/4 cup of gluten-free flour instead. Oat flour will not work here, nothing to bind it.
Can I use almond four instead of the wheat or all purpose flour? Will they turn out similarly?
Hey, Mandy. Don’t recommend doing that. Almond flour requires different kind of binding. I will work on a gluten free version of this and create a seperate recipe.
I thought these were gluten free?
Sorry no, they are high in protein but not gluten free.
What are your thoughts on subbing the protein powder with almond flour? TIA
Regular whey flour is a much better substitute for protein powder than almond flour is.
Is the protein powder optional? Ie the recipe is fine without it?
Just substitute the protein powder with the flour and you’re good to go! They’ll have less protein overall but the taste won’t be that different.
Absolutely deliciousโฆ I didnโt grease my pan enough next time Iโll use the liners..
You’ll definitely want to use liners with these!